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chromhmm-derived chromatin states (Epigenomics ag)

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Epigenomics ag chromhmm-derived chromatin states
Chromhmm Derived Chromatin States, supplied by Epigenomics ag, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/chromhmm/chromhmm+derived+chromatin+states/bio_rxiv__2025__06__25__661532-799-35-46
Average 90 stars, based on 1 article reviews

chromhmm-derived chromatin states - by Bioz Stars, 2026-09

90/100 stars

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Gene Expression:

Article Title: Implications of noncoding regulatory functions in the development of insulinomas.
Article Snippet: .. Roadmap Epigenomics Project ChromHMM and gene expression data ChromHMMannotation and processed H3K27me3 peak files fromHI49 and EC50 were downloaded from the respective sources. ..

Methylation:

Article Title: Increased local DNA methylation disorder in AMLs with DNMT3A-destabilizing variants and its clinical implication
Article Snippet: .. The core 15-state chromatin states inferred by ChromHMM were downloaded from Roadmap Epigenomics (RRID:SCR_008924) for the enrichment analysis of differentially methylated regions. ..

Chromatin Immunoprecipitation:

Article Title: Polygenic burden of short tandem repeat expansions promotes risk for Alzheimer's disease.
Article Snippet: .. Testing for enrichment of STRs in chromHMM and ChIP-seq annotations We downloaded chromHMM partitions under the 18 state model for the adult human hippocampus (ENCODE tissue ID E071) from the Roadmap Epigenomics Consortium (https://egg2.wustl.edu/roadmap/ web_portal/chr_state_learning.html)32,33. ..

Derivative Assay:

Article Title: Misexpression of inactive genes in whole blood is associated with nearby rare structural variants
Article Snippet: .. Regulation features derived from chromatin states were calculated using the Roadmap Epigenomics Project’s 15-state ChromHMM trained on PBMC data. ..

Article Title: Misexpression of inactive genes in whole blood is associated with nearby rare structural variants
Article Snippet: .. Regulatory features derived from chromatin states were calculated using the Roadmap Epigenomics Project’s 15-state ChromHMM trained on PBMC data. ..

other:

Article Title: Increased local DNA methylation disorder in AMLs with DNMT3A-destabilizing variants and its clinical implication.
Article Snippet: The core 15-state chromatin states inferred by ChromHMM were downloaded from Roadmap Epigenomics for the enrichment analysis of differentiallymethylated regions.